Showing posts with label biol135. Show all posts
Showing posts with label biol135. Show all posts

Monday, December 22, 2008

Phylogenomics suggest ratites lost flight multiple times

ResearchBlogging.orgRebekah Wukits discusses recent findings about ratite evolution for Bio 135.


Ratite evolution has been debated for centuries. Some of the earliest evolutionary biologists questioned whether or not ratites had a linear evolution or if the major groups had had independent origins. Richard Owen proposed that living ratites had much more in common with other flight capable groups while being united by the “arrested development of wings unfitting them for flight”. In 1951, two ornithologists, Mayr and Amadon, stated that, “the present consensus is that the main groups of these birds are of independent origins”.


Traditionally, ratites have been considered to be monophyletic, or ascending from a common ancestor. They are placed in the major group Noegnathae, with the flight-capable tinamous as a sister group. Since the extinct tinamous were capable of flight, it has been thought that the ratites lost flight once in their history, then diversified. Unfortunately, simple geography contradicted this theory. All living ratites (rheas, cassowaries, emus, ostriches and kiwis) are isolated on different southern continents.  Rheas are found in South America. Ostriches reside in Africa. Emus and cassowaries are found only in Australia and kiwis can be found in New Zealand. Extinct species of ratites follow the same pattern. Moas were also found in New Zealand, and elephant birds lived in Madagascar. The question became that if flight was lost once early in ratite evolution, how did they become so spread out and isolated? The perfect answer seemed to reside in the theory of continental drift. Ratites came from a single ancestor, lost flight and were then isolated when Gondwana broke up.


Though most of the recent studies of morphological and molecular ratite characteristics have supported the monophyletic theory, many still debate it. Rarely challenged is the fact that adaptations to a cursorial lifestyle, one that is adapted to running, can lead to convergent evolution, and can be misleading when basing phylogeny on morphology. This led scientists to do further phylogenomic studies in order to test the prevailing theories. These studies include data taken from genetic loci that represent the entire avian genome. In this particular study, data was taken from 20 loci that are dispersed widely throughout the avian genome. The data set included all living ratites and eight outgroup taxa. Previously done similar genetic tests have supported ratite monophyly, however these tests were more sophisticated and advanced and supported a different conclusion.


The results are as follows: analysis of the data strongly supports placing the flight capable tinamous within ratites and ostriches as the sister group. If this new phylogeny is correct, the single loss of flight in ratites is unlikely. In order for all ratites to have lost flight in a common ancestor, the tinamous would have had to regain flight at a later time. It is much more likely that flight was lost multiple times do to convergent evolution than to have gained flight in the earliest ancestors, lost flight in the common ancestor of ratites, than gain flight again in tinamous.


It seems more likely that ratites descended from a single ancestor, than diversified when gondwana broke up. Flight was lost in each family and convergent evolution occurred due to similar environmental conditions. Flight is very costly both energetically and morphologically. Ratites had little pressure to fly and since these features are costly to maintain, they became reduced over time.  The theories of this paper seem concrete however more study is needed. Their own genetic studies produced conflicting results. Placing tinamous within ratites has great implications for their evolution and dispersal. This idea needs to be further developed and supported.


Reference:


J. Harshman, E. L. Braun, M. J. Braun, C. J. Huddleston, R. C. K. Bowie, J. L. Chojnowski, S. J. Hackett, K.-L. Han, R. T. Kimball, B. D. Marks, K. J. Miglia, W. S. Moore, S. Reddy, F. H. Sheldon, D. W. Steadman, S. J. Steppan, C. C. Witt, T. Yuri (2008). Phylogenomic evidence for multiple losses of flight in ratite birds Proceedings of the National Academy of Sciences, 105 (36), 13462-13467 DOI: 10.1073/pnas.0803242105

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Sunday, November 2, 2008

My Inferiority to Scrub Jays

ResearchBlogging.orgRudy Cerda confesses for the Birds & Reptiles class. Elsewhere, Claire Go has blogged about the same study!


Western Scrub Jay with peanutAs much as I like to think that I plan according to future needs, such as time management in order to write papers, study for exams, and even complete this blog, I know I can only operate under pressure. However, when planning for “essential” needs such as food or snacks, I save the best for last or at least hide some away in case I may need or want any later. For example, I’ll always leave my favorite flavor of candy last because I want that flavor to linger for awhile, or I’ll eat the crust first on a slice of pizza because I’d rather wait to take in the gooey, cheesy goodness on the other side of the piece... but enough of my planning for less than crucial things. Aphelocoma californica, better known as the western scrub jay, may exhibit planning for the future in perhaps a more critical way than I do.


According to the Bischof-Köhler hypothesis, only humans are able to disconnect themselves from their current motivation and plan for the future. Apparently other animals do not have crystal balls to predict their future needs and any future-oriented behaviors are due to either patterns of fixed actions or prompted by current motives. There have been previous studies involving rats and pigeons that have that have only supported the Bischof-Köhler hypothesis by the animals solving tasks involving the future, however, the “future” was only a very short time period. Also, primates have also shown the ability to take actions based on future consequences; however, the motives or reasons for the actions have not been differentiated.


Scrub jays are relatively abundant around campus and I frequently observe jays bouncing around with nuts in their beaks. Every so often I’ll see one that is particularly sneaky and decides to stash its food away as if its saying, “You’re not going take this from me,” or preparing for the budget cuts around campus (or perhaps they can sense the inevitable collapse of the economy!) that may take away their beloved seeds. Raby et al also noticed this behavior in western scrub jays and hypothesized that the jays store food based on anticipation of future need. They predicted that the jays would do this in an area in which they have learned they will be hungry and by storing a particular food item in a place where they know it will not be available.


To test this hypothesis, a total of eight western scrub jays were placed in two different compartments on alternate mornings for six days. In one compartment they were given breakfast and the other they were not. After this training, the birds were given food unexpectedly given food to either eat or store in the evening. If the birds were capable of planning for the future, they would store relatively more food if they were in the compartment in which they were not given breakfast because they would anticipate being hungry the next morning… psychics! And the results displayed their fortune-telling abilities as they stored significantly more food (more pine nuts than powdered nuts) in the compartment in which they had not received breakfast.


To ensure the hoarding of the pine nuts was not associated to a specific compartment, two different types of food were given; a specific food was given in a specific compartment and both types in a third compartment. If the jays had a preference of a certain food they would store more of the “other” food rather than the “same” food when offered to store the food away. The results supported the hypothesis of preferential storing food.


Often I find it hilarious when I see a jay hopping around with something in its beak, it hides the food and about 30 seconds later it’s looking for the food it just sneakily stashed away! Some planning if it can’t even remember where it put its food! In the Raby study, it was stated that the birds were slightly hungry, so perhaps those greedy jays around campus are just playing dumb because they aren’t hungry at that moment in order to fool everyone and plot their takeover of campus and my apartment complex! Well, it’s nice to know that my planning skills may be significantly inferior to a scrub jay’s.


Reference:



C. R. Raby, D. M. Alexis, A. Dickinson, N. S. Clayton (2007). Planning for the future by western scrub-jays Nature, 445 (7130), 919-921 DOI: 10.1038/nature05575



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Saturday, November 1, 2008

Convergence of the Death Adder with Viperidae

Common death adder (Acanthophis antarcticus)Submitted by Brandon Williams for the Birds & Reptiles class.


In a study of the Australian death adder (Acanthophis antarcticus), a member of the Elapidae, Richard Shine observes the convergence of the snake with the Viperidae (Shine 1980). There are no vipers that live in Australia, yet the death adder resembles vipers much more so than other members of the elapids. Shine hypothesizes that the sit-and-wait ambush hunting techniques select for similar adaptations in vipers and death adders. Most elapids are more active searching foragers.


In many ways Shine shows how death adders are adapted in similar ways to vipers rather than their elapid cousins. Death adders feed mostly on ectotherms as juveniles and switch to endotherms as adults. Death adders have a shorter stouter body than most elapids and a pronounced head. A. antarcticus have a delayed sexual maturation and a corresponding slow growth rate. The delayed maturation probably evolved after the ambush hunting strategy, which tends to allow for high survivorship because that leaves less opportunity for predation on the snakes. A. antarcticus has a unique adaptation for ambush hunting which is completely absent in all other elapids, yet is found in nine different vipers. This adaptation is caudal luring; using the thin, yellow wriggling tip of their tail as bait for prey. All of these adaptations point to convergence of the death adder with vipers. The reason for this is the ambush hunting technique.


Shine also posits that because just over half of mature females were found not to be reproductive that female death adders reproduce every other year. He was probably correct, however there could be some genetic or another unseen reason why many of the females were non-reproductive. Testing his hypothesis could be done. He could collect live female specimens of mature size during the breeding season, tag them with a number, noting whether they were reproductive or not, and let them go. Then over the next few breeding seasons he could collect female death adders that had been tagged and note whether the ones that were specifically reproductive last season were non-reproductive the following season. Over a few seasons he could see how consistent the data was with his every other year hypothesis.


Reference:


Shine, R. 1980. Ecology of the Australian Death Adder Acanthophis antarcticus (Elapidae). Pp. 281-289. Evidence for Convergence with the Viperidae. Herpetologists' League.


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