Showing posts with label birds. Show all posts
Showing posts with label birds. Show all posts

Tuesday, May 18, 2010

Holy Kreuzschnabel!! Look at that beak pry open a pine cone!



I just discovered - a bit too late for my Birds and Reptiles class this semester, but I hope students retain enough interest to check this out - the YouTube channel of Cornell's Lab of Ornithology! Some lovely hi-def videos of birds there, including the one above.

These birds remind me of the year and half I spent a decade ago working with (and cleaning the scheisse off of the cages of) these birds' cousins, the Red Crossbills, the favorite Kreuzschnabel of my postdoc mentor Tom Hahn, then in Princeton. We had a whole colony of the Red birds, most of them (when not part of an experiment) up on the roof of Guyot Hall in an outdoor aviary that it was my charge to look after. Busy little birds who constantly needed something to sink their twisted little beaks into and shred to pieces - so we had to keep providing things like cat-scratching boards (cardboard ones from the pet shop) and pieces of wood. What really made them happy was when, around New Year's, Tom and I drove around the upscale suburbs around the Princeton campus picking up discarded Christmas trees to bring back to the aviaries. Oh how the crossbills loved that! Got really excited to have entire conifer trees to play on, and eventually shred to bits over several months - which, of course made my clean-up tasks that much harder! Some of them got excited enough to actually build nests in the trees and even fledge a few young. I wish I'd had a video camera back then, for I could've captured some wonderful acrobatic behaviors. At least I can now watch this Lab of O video and sigh nostalgically... I miss the naughty little beasts!

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Friday, May 7, 2010

How the wealth of your neighborhood and the water in your yard affect bird diversity

I wrote the following essay summarizing some early conclusions from the Fresno Bird Count for the April issue of the Yellowbill, the newsletter of Fresno Audubon. My student Brad Schleder presented some of these results as part of his masters thesis exit seminar earlier this week, and we also had a poster at the College of Science & Mathematics research poster symposium earlier today. So I thought I should also share this essay with you here:

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The American West faces a water crisis. Drought, urban growth, climate change and the continued demands of agriculture have combined to heighten the competition among water users. In California’s San Joaquin Valley, court-ordered water diversions under the Endangered Species Act have radically decreased water deliveries to many Valley farmers. A recent settlement providing for the restoration of the San Joaquin River and ongoing drought (in a region subject to repeated cycles of drought) have only exacerbated public debate about water and spurred the search for ways to conserve it. Valley farmers are experimenting with dry land farming methods, while valley cities are seeking ways to reduce urban water use. In the Fresno-Clovis Metropolitan Area, the City of Clovis already meters water use (but has relatively low water rates) and the City of Fresno will start metering water in 2013. How does our use of water (amount and method of use) affect other species such as birds that also occupy our urban landscapes? What can we do to improve the environment for ourselves and for sustaining biodiversity in the long run?

The Fresno Bird Count (FBC, http://www.fresnobirds.org/) was established by my laboratory at Fresno State in spring 2008 to begin long-term monitoring of bird species in the Fresno-Clovis metro area in part to address such questions about human actions and their effects on biodiversity. The FBC was modeled after the Tucson Bird Count which is now in its 10th year, as a citizen science project where volunteer birders from the community collaborate to gather data on bird distribution and abundance using statistically rigorous sampling and standardized census methodologies. As in Tucson, our volunteers count all the birds they can detect while standing at pre-determined fixed locations for 5 minutes each (i.e., a 5-min point count; see the FBC website for details of the protocol). Each point is a randomly selected location within a 1 km X 1 km square cell that is part of a 460 square kilometer (approx. 178 square miles) grid covering most of Fresno-Clovis and some outlying areas. In the first two years of the FBC, we have managed to survey about 180-200 of these points, and are seeking more volunteers to expand our coverage, because the more finely we can cover the highly variable urban landscape, the better our understanding of just what constitutes habitat for birds in the city and how various bird species use the spaces and resources we leave for them.

The FBC started with two broad goals: to keep track of how many birds of which species occur in the area and how their numbers change under ongoing urban growth; and, to provide basic bird data for more detailed studies focused on the connections between what we do in the urban environment and how birds respond to resulting changes in habitats. The first of such studies has just been completed by my graduate student and FBC coordinator Brad Schleder in the form of a Masters thesis. Brad focused on how we water our lawns and yards, and how the resulting residential landscapes attract different kinds of birds. After spending much of last summer driving around the city to various bird count locations to measure aspects of the habitat such as the number of trees, canopy cover, amount and height of grass, and degree of watering, Brad found some interesting patterns that may give pause even to some long-term birdwatchers living in the area. Of course, it may not surprise you to learn that we find more species of birds towards the north and north-west, in a slight trend of increasing diversity as we approach the river. On the other hand, would you have guessed that bird diversity is a good indicator of the wealth of a neighborhood? That indeed seems to be the case: more species of birds are found in wealthier neighborhoods than in poorer ones, and this is a pattern I’ve also found in Phoenix, Arizona! The reason here may have something to do with how people water their household landscapes. Brad found that poorer neighborhoods don’t water their yards quite as much as wealthier ones. This surprised us because, without metering, the cost of water is not a constraint for residents in Fresno - yet we already see a pattern predicted to occur as a result of metering! Perhaps the direct cost of water is not the only thing affecting the habitat in poorer neighborhoods; rather, landscaping one’s yard and maintaining it regularly is a costly enterprise regardless of how much water costs. If anything, the metering of water (if coupled with a rate structure designed to encourage water conservation) will only add to the burden and exacerbate the contrast in landscapes between rich and poor parts of the city! And the birds will likely notice the changes in the urban landscape and respond by changing their residential address too.

These first results from the FBC support a conclusion that is emerging from similar studies in other cities throughout the US: that biodiversity in cities is unevenly distributed, and tends to favor the rich. In other words, in addition to economic hardship, the poor also face an environmental injustice because birds (and other wildlife) will also flock preferentially to the richer neighborhoods where they may find more diverse landscaped yards with plenty of water and food. That may not be good news for Fresno and other valley cities facing tough economic challenges right now, with high levels of unemployment and rising poverty. Yet, there is also an opportunity here for city planners and developers to rethink the pattern of urban growth and plan for amenities such as more public parks and roadside landscaping that will support more biodiversity and provide greater access to nature for those who may need it the most in these troubled times.

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Published in the April issue of the Yellowbill.

Posted via web from a leaf warbler's gleanings

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Monday, March 22, 2010

Why are there so many bird species in the Himalayas?

This week, the CSU-Fresno Consortium for Evolutionary Studies brings you another public lecture in our Evolutionary Biology Lecture Series. On the evening of Thursday, March 25, 2010, join us at the Satellite Student Union on campus to hear Prof. Trevor Price of the University of Chicago tell us about his work on the origin, distribution, and maintenance of high bird species diversity in the Himalaya. The public talk starts at 7:30 PM, and you can download the flyer for the talk below. On the following afternoon, Dr. Price will give us another talk in the Biology department colloquium series.

I will try to share podcasts of both the talks - probably over spring break which starts next week. I still have the last few talks recorded that I mean to podcast as well. In my vast spare time...

Posted via email from a leaf warbler's gleanings

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Wednesday, March 10, 2010

A California Quail, caught in flight

Not the greatest of photos, but not bad for one of my very first pictures of this bird (I think, anyway). I caught this bit of action yesterday at the Sierra Foothill Conservancy's McKenzie Table Mountain Preserve, where they will be hosting an open house this Saturday, March 13th. If you live in the Fresno area, and haven't discovered this beautiful little valley, I urge you to go there on Saturday, enjoy the birds (we saw quite a few apart from this quail, including two Bald Eagles yesterday) and the wildflowers, and consider becoming a member of the Conservancy to help them protect more such habitats in this area.

Posted via web from a leaf warbler's gleanings

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Monday, March 1, 2010

Signs of spring at McKenzie Preserve

Images captured on a Sunday morning hike in the Sierra Foothills Conservancy's McKenzie Table Mountain Preserve.

Posted via web from a leaf warbler's gleanings

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Thursday, February 25, 2010

The Sibley eGuide to the Birds of North America - now a (pricey) iPhone app

The Sibley Guide to Birds is now available as an app for iPhone and iPod Touch. Check it out at the iTunes app store (here).

Here's a review of the app, which just hit the iTunes store earlier this week. While I own and like the paper copy of the Sibley Guide to Birds, I'm not quite ready to drop 30 bucks on this app yet. The most interesting feature seems to be the bird song collection, which apparently includes multiple recordings/variants. Sounds like an audio equivalent of the multiple illustrations which distinguish the paperback Guide - if so, the app becomes more compelling as an alternative/companion to iBird Explorer Pro, which I have become used to on my iPhone, and which seems to be better designed as an app, and has a few more features - perhaps. Unfortunately, unlike a paperback field guide that I can browse through in a bookstore before purchasing, there is be no way to try this app out before buying it! But, whom am I kidding - I'll probably get it anyway, eventually, just as I have the paperback Sibley as a backup to my preferred National Geographic Guide. One can never have too many field guides - and the publishers of these eGuides are counting on that kind of thinking from a (sizeable) niche market. But why aren't they dropping prices at least below that of the paperback edition? Why does the otherwise successful app store pricing model (low price+high volume=profit) not apply to these field guides? If anyone reading this has bought the app, I'd love to hear what you think!

Posted via web from a leaf warbler's gleanings

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Monday, February 22, 2010

How the Spoon-billed Sandpiper uses its unique beak

David Sibley, of the Sibley Guides to Birds fame, recorded the above video of the critically endangered Spoon-billed Sandpiper, Eurynorhynchus pygmeus, foraging in the mudflats of Thailand where they winter. In an expanding upon the observations annotating the above video, Sibley proposes a hypothesis about how these lovely little birds use their odd bills more like shovels than spoons:


Before seeing the birds, most people assume that they use their bills to swipe sideways through the water, in the manner of the true spoonbills (genus Platalea), sensing and grabbing food items as they pass between the flattened tips of the mandibles. But in reality these sandpipers use very little sideways motion in their feeding. There does seem to be a bit more sideways movement of the bill than in other small sandpipers such as Red-necked Stint, but these are subtle, irregular, and tiny movements and nothing like the rhythmic sideways swiping of true spoonbills.

Coming up with a new hypothesis proved difficult. At first I couldn’t detect any difference in the way these sandpipers fed compared to the stints. They do tend to keep their head down and their bill in the water for longer stretches than the Red-necked Stints, which have a more frenetic foraging action dipping their bill briefly into the water and mud and then raising it again, over and over. Also, the Spoon-bills seemed to feed exclusively in water – I never saw one feeding on open mudflats.

After several days of observation I noticed that while their bills were in the water the Spoon-billed Sandpipers were pushing lumps of mud and algae ahead of them, using their bills as shovels to move mud around. They always look a bit “husky” and thick-necked, which comes in part from this habit of pushing the bill through the mud, as they use their body for leverage and push with their legs. It’s not unusual to see one of their feet suddenly slip backwards under the effort of pushing. Once some mud or algae has been lifted the bird very quickly works the bill tip around underneath it, then moves on. This video shows the shoveling motion clearly in the last scene. (The video will be a little sharper if you click here to open it in YouTube and select 480p).

This seems like a plausible hypothesis to explain the unusual bill shape. The broad bill tip could be used as a shovel to get under and lift up loose substrates, and then would make an effective tool for finding and grabbing any small invertebrates that were in the slurry of mud and water flowing in behind the lifted material. This could also explain why they cover so much ground on the mudflats. If they are looking for loose bits of mud/algae/etc. that they can lift to search for prey, these might be scattered across a wide area, forcing them to walk in search of these foraging opportunities.

Have you ever seen these birds forage? Are you in a position to make more observations in other locations to see if they do the same thing? I am not, much to my regret while watching the above video... Given the rapidly declining populations and our ignorance about even their basic biology, it is clear that the spoons these birds are born holding in their mouths are far from silver ones! Can we at least find out how this marvel of evolution, this wonderful spoon-bill, works before we are forced to bid adieu to the Spoon-billed Sandpiper?

Posted via web from a leaf warbler's gleanings

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Saturday, February 13, 2010

Nilavi and Madhu's Great Backyard Bird Count 2010


This Friday started for me with my 4-year-old daughter Nilavi jumping up on the bed and shaking me excitedly with: "Appa! Wake up - let's do the bird count!" Lovely way to start the day, eh? So, after I had awakened fully, Nilavi and I grabbed our binoculars and headed out to the back porch, to conduct our very first count for the Great Backyard Bird Count 2010. Not a bad way to start of Darwin Day either!

As a strong enthusiast for citizen science, and founder of the Fresno Bird Count, I am a bit embarrassed to admit that I haven't volunteered to participate in too many such counts myself! Something about being a "professional" ornithologist, I guess... its not a hobby when I'm doing it regularly for my own projects! But when I have such a bright-eyed partner to get me out of bed and out the door, I just might find myself as a citizen scientist more often. Within the next few days, in fact, for Nilavi is keen to count birds on every one of the 4 days of this GBBC, which runs through this long weekend, from Feb 12-15, 2010.
 
So we did a basic 15 minute count for the first day, focusing on birds within and in the visible vicinity of our backyard. It was far from a dull quarter of an hour, what with a larger than usual flock of American Robins calling and fluttering about the tops of several bare trees, a couple of Northern Flickers tapping along the bigger branches, White-crowned Sparrows singing in the brush of a neighbor's yard, and a flock of Cedar Waxwings bejeweling the tree crowns! We counted a total of a dozen species, and a short while ago, entered our data into the GBBC database. Here's our complete checklist:

California Gull - 15
Mourning Dove - 8
Northern Flicker - 2
Western Scrub-Jay - 2
American Crow - 2
American Robin - 22
Northern Mockingbird - 1
European Starling - 3
Cedar Waxwing - 25
Yellow-rumped Warbler - 1
White-crowned Sparrow - 4
House Finch - 5

And later, I managed to capture the above images of some of the birds. How was your GBBC experience?

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Sunday, January 17, 2010

Astonishing image of a bird and the recent solar eclipse!

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Wednesday, January 13, 2010

Hummingbirds: Magic in the Air (full video)


We didn't make it back to Fresno in time to watch this air last Sunday, on PBS' Nature. How wonderful that the entire video is available for viewing online! Enjoy the magic...

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Tuesday, January 5, 2010

Hummingbirds: Magic in the Air - this Sunday on Nature (PBS)

Now this looks like something worth setting up your DVR to record this sunday: PBS Nature's upcoming episode (premiering Sunday, Jan 10, 2010) on Hummingbirds. Here are a few excerpts of stunning footage that'll wow you:



Hummingbird babies:



Incredible agility - featuring biologist Doug Altshuler (whom we tried to hire in our department at Fresno State a few years ago... when we were still able to hire anyone at all!):



Expert hunters:


Posted via web from a leaf warbler's gleanings

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Saturday, October 17, 2009

Signals and songs in the avian world

I'm often looking for videos on the web to enhance my lectures (or merely to jolt students out of the slumber my soothing voice may put them into from time to time), especially when teaching about animal behavior. Its always more impressive to see an animal carry out some astonishingly bizarre behavior than to read about it or have it be described in class by someone who may never have seen the behavior either! Places like Youtube are therefore quite the boon for the modern professor of ethology, and a casual perusal of this blog will show you how much I fall into that happy camp. The exciting thing is that lately, competition has been heating up among the online video portals, bringing us access to all kinds of video treasures. I stumbled upon one such treasure today when I discovered that youtube now has, in its growing Nature channel, Sir David Attenborough's entire series on The Life of Birds!



Since we have been exploring acoustic signals in my Animal Communication class in recent weeks, with birds (of course) starring as prime examples, this is a perfect time to share this episode where one of humanity's most eloquent communicators takes us on a wonderful exploration of some of nature's most Eloquent Communicators:






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Sunday, September 20, 2009

A punk-size T-rex and an Eagle that ate children?!

ResearchBlogging.orgOne trait that shows interesting evolutionary trends is the size of animals. Body size plays a significant role in the most important interactions between animals: competition (for resources or mates) and predation (for both predator and prey). Body size is also, of course, significant for a variety of physiological reasons. It's no surprise, therefore, that biologists spend a lot of time thinking about body size, and have discovered some intriguing patterns. For instance the so-called island rule in biogeography includes both insular gigantism (relatives of smaller-bodied mainland species tend to be larger in island populations) and insular dwarfism (relatives of larger-bodied mainland species tend to be smaller on islands!) - and both of these patterns are well supported empirically. We also have apparent body size trends in some lineages where successive descendants keep getting bigger and bigger until they reach some apparent limit and go extinct. This might happen because of predator-prey arms races, competition, or runaway sexual selection where female preference drives the exaggeration of a trait (e.g., antlers) in turn selecting for larger body size to support that exaggerated trait.


The Search



Our understanding of how large some species can get and still function well is somewhat limited by the fact that many of the largest species ever to have evolved have gone extinct, leaving us to speculate whether their very size led to their extinction. Were the giant Haast's Eagles of New Zealand reduced to scavenging because they evolved too rapidly to become too big to be able to hunt? On the other hand, did Tyrannosaurus rex not become a good predator until it attained a sufficiently large body size? Our hypotheses about body size can thus go in different directions depending upon taxon and ecological circumstances. After all, we can only infer so much from reconstructing the anatomy of some of these giant beasts from their fossilized skeletal remains - but we are getting better at studying the fossils and visualizing their functions, by adapting technologies such as CAT (computed axial tomography) scans. This week some of the media picked up two papers reporting interesting findings about the two taxa mentioned above. The AP and several websites who picked it up from there got all excited about how the Haast's Eagle may have been the fearsome aerial predator of Maori legend as it might have hunted humans - especially (oh the horror) children! The original paper by Scofield and Ashwell while generating that sensational headline, is actually more interesting because of its approach and analysis of skeletal material, and in suggesting greater flexibility in the allometry of body size evolution. The authors used CAT scans to reconstruct and analyze the brain structure of the eagle to show that while the body of this species increased rapidly in size upon their arrival in New Zealand - presumably because of the lack of mammalian predators and the presence of a giant prey, the Moa - their brains did not increase in proportion! They use allometric analysis to show that these birds have much smaller brains for their body size compared to other Falconiformes, and this large size seems to have evolved rapidly: Haast's Eagle became 10-times the size of its putative ancestral lineage within a short 1.8 million years! That's what going after Moas, as seen in the above painting, meant for the evolution of this bird!! But wait, weren't these birds too big to hunt actively, instead scavenging off Moa carcasses like Condors and other large vultures?


The large morphological size of Haast’s eagle has led to competing hypotheses concerning its life style and behavior. Here we analyse neuroanatomical indicators to address questions concerning the behavior of Haast’s eagle: (1) was it an active predator or merely a scavenger of carcasses; (2) was it most likely to inhabit forest or open places; and (3) did its large body weight allow strong active flight?

And therefore:


We predict that if this eagle had vulturine habits it would show a combination of all, or some of, the following: (1) somatic evidence that it made significant use of olfaction; (2) adaptations indicative of an ability to undertake sustained gliding flight; (3) large eyes adapted to locate prey from considerable distances; and (4) a lack of evidence for the ability to attack and kill prey with its legs and talons. Alternately, if these features were not found to be present, we would suggest that Haast’s eagle was most likely an active hunter.

To do this, they look not just at the whole brain, but specific relevant regions of the brain where the size can be inferred from their scans, as well the anatomy of the eye and the optic nerve. They found that the olfactory system of the Haast eagle's brain was proportionally similar to smaller eagles from the Accipitridae and much smaller than in vultures. So these birds probably did not rely so much on smell to find food! Further, the visual system also remained similar to the Eagles, not apparently gaining any further acuity like we find in the vultures.


We suggest this disproportionate growth was only possible in the unique New Zealand environment where Harpagornis was not threatened by mammalian predation or competitors and was able to develop specific adaptations to predating on a particular prey, the moa, by evolving a bigger head and more robust talons. Also we prefer this interpretation rather than the alternative of Harpagornis evolving from a similar sized ancestor and in doing so undertaking a reduction in endocranial capacity, and degradation of the optic and olfactory lobes.

They then examined flight morphology to conclude that here the bird was more like vultures in being better adapted to soaring (despite its relatively short wings) than the fine control exhibited by its forest dwelling cousins. It may have dwelt more in open grassland habitats where it could swoop down upon its prey from cliffside perches. And here they draw upon corroborative evidence from Maori legend - for this fearsome beast went extinct from NZ skies only about 500 years ago!

Although no European scientist ever observed Haast’s eagle hunting, Maori oral tradition provides some evidence to support our behavioral reconstruction. One description given to Sir George Grey in 1872 (Grey, 1873, pg 435) states: “This bird, the Hokioi, was seen by our ancestors. We (of the present day) have not seen it. That bird has disappeared now-a-days. The statement of our ancestor was that it was a powerful bird, a very powerful bird. It was a very large hawk. Its resting place was on the top of the mountains; it did not rest on the plains. On the days in which it was on the wing our ancestors saw it; it was not seen every day as its abiding place was in the mountains. Its colour was red and black and white. It was a bird of (black) feathers, tinged with yellow and green; it had a bunch of red feathers on the top of its head. It was a large bird, as large as the moa”. Another description reported by the Reverend Stack (Stack, 1878, pg 63) said: “A Pouakai had built its nest on a spur of Mount Tawera, and darting down from thence it seized and carried off men, women, and children, as food for itself and its young. For, though its wings made a loud noise as it flew through the air, it rushed with such rapidity upon its prey that none could escape from its talons”. The carrying off of men and women is undoubtedly an exaggeration, but the description of its presence over open ground and mountainous terrain is consistent with our deductions.

So that is the sensational tidbit that the media can run with - this was a terrifying eagle that carried off children!! But the main thrust of the paper itself is in demonstrating that Haast's eagle was an active predator, with an oversized skull (hence disproportionately smaller brain) that attacked moas from the air, striking them with its strong, sensitive talons in the lower back over the kidneys and at the base of the skull. In the bigger evolutionary picture, this is a fascinating case study showing that neurological (brain) and somatic (body) expansion can be mismatched even in cases of island gigantism - there appears to be considerable flexibility in how natural selection affects different parts of the brain and body under different ecological conditions (such as the lack of predators or presence of new bigger prey).


Meanwhile, the other paper making the news this week goes the other way, describing a small Tyrannosaurid precursor of T. rex from
China that appears capable of hunting on its own too - because that lineage had already evolved skeletal features for the predatory lifestyle made famous by their much larger descendants! Large size was thus not a prerequisite for that lifestyle to evolve. Here's the abstract from Sereno et al in Science:


Tyrannosaurid dinosaurs comprised nearly all large-bodied predators (>2.5 tons) on northern continents during the Late Cretaceous. We show that their most conspicuous functional specializations—a proportionately large skull, incisiform premaxillary teeth, expanded jaw-closing musculature, diminutive forelimb, and a hindlimb with cursorial proportions—were present in a new small-bodied, basal tyrannosauroid from Lower Cretaceous rocks in northeastern China. These specializations, scaled up in Late Cretaceous tyrannosaurids with body masses approaching 100 times greater, drove the most dominant radiation of macropredators of the Mesozoic.

Better yet, thanks to Futurity, the new science portal I wrote about recently, we can get the story straight from Dr. Sereno's in this video:



Cool as a small Tyrannosaur sounds, this dude was still over 9 feet tall, so I'd still avoid it! And this latest among an already large set of fossil finds from China makes me wonder if the Jurassic Park franchise might head eastwards next!


References:



  1. G. Grey (1873). Description of the extinct gigantic bird of prey, Hokioi, by a Maori. Transactions of the New Zealand Institute, 5: 435

  2. Scofield, R., & Ashwell, K. (2009). Rapid Somatic Expansion Causes the Brain to Lag Behind: The Case of the Brain and Behavior of New Zealand's Haast's Eagle (Harpagornis moorei)Journal of Vertebrate Paleontology, 29 (3), 637-649 DOI: 10.1671/039.029.0325

  3. Sereno, P., Tan, L., Brusatte, S., Kriegstein, H., Zhao, X., & Cloward, K. (2009). Tyrannosaurid Skeletal Design First Evolved at Small Body Size Science DOI: 10.1126/science.1177428

  4. J. W. Stack (1878). Sketch of the traditional history of the South Island Maoris. Transactions and Proceedings of the New Zealand , 10, 57-92

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Monday, December 22, 2008

Phylogenomics suggest ratites lost flight multiple times

ResearchBlogging.orgRebekah Wukits discusses recent findings about ratite evolution for Bio 135.


Ratite evolution has been debated for centuries. Some of the earliest evolutionary biologists questioned whether or not ratites had a linear evolution or if the major groups had had independent origins. Richard Owen proposed that living ratites had much more in common with other flight capable groups while being united by the “arrested development of wings unfitting them for flight”. In 1951, two ornithologists, Mayr and Amadon, stated that, “the present consensus is that the main groups of these birds are of independent origins”.


Traditionally, ratites have been considered to be monophyletic, or ascending from a common ancestor. They are placed in the major group Noegnathae, with the flight-capable tinamous as a sister group. Since the extinct tinamous were capable of flight, it has been thought that the ratites lost flight once in their history, then diversified. Unfortunately, simple geography contradicted this theory. All living ratites (rheas, cassowaries, emus, ostriches and kiwis) are isolated on different southern continents.  Rheas are found in South America. Ostriches reside in Africa. Emus and cassowaries are found only in Australia and kiwis can be found in New Zealand. Extinct species of ratites follow the same pattern. Moas were also found in New Zealand, and elephant birds lived in Madagascar. The question became that if flight was lost once early in ratite evolution, how did they become so spread out and isolated? The perfect answer seemed to reside in the theory of continental drift. Ratites came from a single ancestor, lost flight and were then isolated when Gondwana broke up.


Though most of the recent studies of morphological and molecular ratite characteristics have supported the monophyletic theory, many still debate it. Rarely challenged is the fact that adaptations to a cursorial lifestyle, one that is adapted to running, can lead to convergent evolution, and can be misleading when basing phylogeny on morphology. This led scientists to do further phylogenomic studies in order to test the prevailing theories. These studies include data taken from genetic loci that represent the entire avian genome. In this particular study, data was taken from 20 loci that are dispersed widely throughout the avian genome. The data set included all living ratites and eight outgroup taxa. Previously done similar genetic tests have supported ratite monophyly, however these tests were more sophisticated and advanced and supported a different conclusion.


The results are as follows: analysis of the data strongly supports placing the flight capable tinamous within ratites and ostriches as the sister group. If this new phylogeny is correct, the single loss of flight in ratites is unlikely. In order for all ratites to have lost flight in a common ancestor, the tinamous would have had to regain flight at a later time. It is much more likely that flight was lost multiple times do to convergent evolution than to have gained flight in the earliest ancestors, lost flight in the common ancestor of ratites, than gain flight again in tinamous.


It seems more likely that ratites descended from a single ancestor, than diversified when gondwana broke up. Flight was lost in each family and convergent evolution occurred due to similar environmental conditions. Flight is very costly both energetically and morphologically. Ratites had little pressure to fly and since these features are costly to maintain, they became reduced over time.  The theories of this paper seem concrete however more study is needed. Their own genetic studies produced conflicting results. Placing tinamous within ratites has great implications for their evolution and dispersal. This idea needs to be further developed and supported.


Reference:


J. Harshman, E. L. Braun, M. J. Braun, C. J. Huddleston, R. C. K. Bowie, J. L. Chojnowski, S. J. Hackett, K.-L. Han, R. T. Kimball, B. D. Marks, K. J. Miglia, W. S. Moore, S. Reddy, F. H. Sheldon, D. W. Steadman, S. J. Steppan, C. C. Witt, T. Yuri (2008). Phylogenomic evidence for multiple losses of flight in ratite birds Proceedings of the National Academy of Sciences, 105 (36), 13462-13467 DOI: 10.1073/pnas.0803242105

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Friday, November 7, 2008

How plastic is your brain? Perhaps you'll find out in the Bio Colloquium today

Well, you will at least learn about neuroplasticity in species that do have more plastic brains then humans. As usual, the seminar will be in Science II, Room 109, starting at 3:00 PM. Be there!


Hormonal and environmental control of neuroplasticity


Dr. Christy Strand


Department of Biological Sciences


California Polytechnic State University


Abstract


Many people have the incorrect notion that the brain is a relatively static organ or that it can degenerate, but not grow. The study of neuroplasticity encompasses changes in the brain from the cellular and molecular level to the gross anatomical level (e.g. changes in the sizes of brain regions). In adult male songbirds, the brain regions that control singing behavior grow seasonally, providing a means to investigate the regulatory mechanisms and the functional consequences of adult neuroplasticity. Specifically, during the breeding season, these regions are larger than at other times of the year due to increases in neuron number and size or decreases in density. Numerous factors that change during the breeding season have been implicated in regulating the growth of these brain regions, most notably, testosterone (T), photoperiod and singing behavior. I use a comparative approach to investigate the effects of T, photoperiod, singing and other social or environmental factors on song control region growth and new neuron incorporation in the adult male songbird brain. I also investigate how environmental, physiological and hormonal factors affect neurogenesis and neuroplasticity in adult snakes and lizards. This integrative approach provides a more complete analysis of the contributions of various factors to the regulation of neuroplasticity in vertebrate animals.




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Sunday, November 2, 2008

My Inferiority to Scrub Jays

ResearchBlogging.orgRudy Cerda confesses for the Birds & Reptiles class. Elsewhere, Claire Go has blogged about the same study!


Western Scrub Jay with peanutAs much as I like to think that I plan according to future needs, such as time management in order to write papers, study for exams, and even complete this blog, I know I can only operate under pressure. However, when planning for “essential” needs such as food or snacks, I save the best for last or at least hide some away in case I may need or want any later. For example, I’ll always leave my favorite flavor of candy last because I want that flavor to linger for awhile, or I’ll eat the crust first on a slice of pizza because I’d rather wait to take in the gooey, cheesy goodness on the other side of the piece... but enough of my planning for less than crucial things. Aphelocoma californica, better known as the western scrub jay, may exhibit planning for the future in perhaps a more critical way than I do.


According to the Bischof-Köhler hypothesis, only humans are able to disconnect themselves from their current motivation and plan for the future. Apparently other animals do not have crystal balls to predict their future needs and any future-oriented behaviors are due to either patterns of fixed actions or prompted by current motives. There have been previous studies involving rats and pigeons that have that have only supported the Bischof-Köhler hypothesis by the animals solving tasks involving the future, however, the “future” was only a very short time period. Also, primates have also shown the ability to take actions based on future consequences; however, the motives or reasons for the actions have not been differentiated.


Scrub jays are relatively abundant around campus and I frequently observe jays bouncing around with nuts in their beaks. Every so often I’ll see one that is particularly sneaky and decides to stash its food away as if its saying, “You’re not going take this from me,” or preparing for the budget cuts around campus (or perhaps they can sense the inevitable collapse of the economy!) that may take away their beloved seeds. Raby et al also noticed this behavior in western scrub jays and hypothesized that the jays store food based on anticipation of future need. They predicted that the jays would do this in an area in which they have learned they will be hungry and by storing a particular food item in a place where they know it will not be available.


To test this hypothesis, a total of eight western scrub jays were placed in two different compartments on alternate mornings for six days. In one compartment they were given breakfast and the other they were not. After this training, the birds were given food unexpectedly given food to either eat or store in the evening. If the birds were capable of planning for the future, they would store relatively more food if they were in the compartment in which they were not given breakfast because they would anticipate being hungry the next morning… psychics! And the results displayed their fortune-telling abilities as they stored significantly more food (more pine nuts than powdered nuts) in the compartment in which they had not received breakfast.


To ensure the hoarding of the pine nuts was not associated to a specific compartment, two different types of food were given; a specific food was given in a specific compartment and both types in a third compartment. If the jays had a preference of a certain food they would store more of the “other” food rather than the “same” food when offered to store the food away. The results supported the hypothesis of preferential storing food.


Often I find it hilarious when I see a jay hopping around with something in its beak, it hides the food and about 30 seconds later it’s looking for the food it just sneakily stashed away! Some planning if it can’t even remember where it put its food! In the Raby study, it was stated that the birds were slightly hungry, so perhaps those greedy jays around campus are just playing dumb because they aren’t hungry at that moment in order to fool everyone and plot their takeover of campus and my apartment complex! Well, it’s nice to know that my planning skills may be significantly inferior to a scrub jay’s.


Reference:



C. R. Raby, D. M. Alexis, A. Dickinson, N. S. Clayton (2007). Planning for the future by western scrub-jays Nature, 445 (7130), 919-921 DOI: 10.1038/nature05575



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Monday, September 8, 2008

Evolutionary ecology of city life at the Central Valley Café Scientifique tonight

Tonight, the Central Valley Café Scientifique presents a talk by yours truly! Here's the announcement:




Of junk food, city jive, & homelessness: the evolutionary ecology of city life



Dr. Madhusudan Katti, Dept. of Biology, California State University, Fresno


Monday, Sep 8, 2008, 6:30-8:30 PM


North India Grill


80 W Shaw Ave.,Clovis, CA 93612 ☎ (559) 325-7788 In the Village Square Shopping Center, S/W of Shaw at Minnewawa.



Go fishing in the bay for dinner, or fish KFC out of the dump - what’s an urban gull to eat? Scarf up the human handouts and you can start breeding early - but can a suburban scrub jay parent raise a family on that kind of food? What’s with the high-pitch songs of the Dutch urban tits? Why are there, often, more birds of fewer kinds in cities than outside them? And why might rich neighborhoods have more bird species than poorer neighborhoods?



As it turns out, recent research on these questions suggests that birds flock to cities (as do monkeys, raccoons and other of our urban commensals) for reasons not all that different from our own. I will draw upon research from my laboratory and elsewhere to explore the evolutionary ecology of how some species may become habitual urban dwellers, and what we might do to allow others to coexist with us amid sprawling cities.



And remember that the Central Valley Café Scientifique meets on the first Monday of every month (except this one because we had labor day last week!).



For more information, visit the website, and/or sign up to the Google Group.





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Tuesday, April 29, 2008

The trouble with eating things with claws

... is that they can get you even after you've killed them! If you need another reason to stay away from eating chicken-feet, check out this photo: they might be kinda hard to swallow!


080424-hawk-claw-02.jpg


Note, however, that this is not a case of a bird trying to fight its way out of they hawk's gullet - more an accident when you try to swallow sharp objects that can rupture your crop and burst through your skin! This poor little Sharp-shinned Hawk had properly killed the small bird it was trying to eat, but appears to have bitten off more than it could swallow, resulting in a rather bizarre death. Can we nominate this hawk for a Darwin Award?


[From Dead Hawk's Last Meal Claws Partway Out]




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Monday, April 28, 2008

Evolution by Song

ResearchBlogging.org[Student post submitted by Darin Alexander]


plumbeitarsus singing.jpgThis is a well written and studied article. This article was about the evolutionary divergence of the Siberian green warbler. The evidence they gather for their thesis is overwhelmingly convincing and they seemed to cover all questions that may come up. They believed and tested that the divergence of song may be the main cause of speciation. This is a highly feasible theory because if you can’t understand someone it is hard to breed with them. (Continues below...)


Background Information: The warbler formed a ring species of interbreeding populations. These populations differed slightly in size, habitat, and calls/songs they use for communication and mating. When we reach the western and eastern Siberian warblers there song was so different that they don’t interbreed causing two separate species. “Molecular genetic data and consideration of preistolene climatological history indicate that the west Siberian and east Siberian forms of green warbler each result from northward expansions of southern forms along separate routes. (Irwin et al 2008)” The article takes a look at the evolution of calls and songs and what possible scenarios might have caused the variation.


The main hypothesis for song variation came from the size of the warbler, the environmental influence of sound, and genetic variation. As the species traveled northward the habitats would have been similar on their parallel routes. With this you would assume that the songs of the two groups migrating would be identical if habitat was the cause of evolution. This was not the case because the eastern and western form varied in song still. As they moved north the land was lusher so warblers grew larger in size. The two groups although similar in size also varied in song so that hypothesis also had to be thrown out.GW map with songs.jpg


Due to genetic testing it shows as the warblers migrated around small genetic changes caused a simultaneous change in their songs and calls. This was indeed the cause of the speciation of the two migrating warblers. When the two reached Siberia there vocal communication was so altered that they had completely different mating songs. You can’t really court a mate if she can’t understand you. So these small genetic changes that occurred while the warbler groups were separated cased the species to separate into two groups.


I believe there is sufficient evidence to conclude that song is the main cause for speciation in the warbler. The tests they conducted took all questions into account. The environment and landscape and there effects on sound was the main question on variation. The Warbler evolution is a fascinating event and it shows us firsthand how a related species can diverge into separate groups.


Reference:


IRWIN, D.E., THIMGAN, M.P., IRWIN, J.H. (2008). Call divergence is correlated with geographic and genetic distance in greenish warblers (Phylloscopus trochiloides): a strong role for stochasticity in signal evolution?. Journal of Evolutionary Biology, 21(2), 435-448. DOI: 10.1111/j.1420-9101.2007.01499.x


Abstract


Abstract
Divergence in signaling systems might play a central role in speciation. To assess the importance of possible causes of signal divergence, we examine two types of vocalizations within a geographically variable species complex, the greenish warblers (Phylloscopus trochiloides Sundevall). Calls, which are used by both sexes throughout the year, and songs, which are sung primarily by breeding males, differ distinctly between two distinct Siberian forms. Through
a ring of southern populations that connect the northern forms, signal divergence is correlated with both geographic distance and genetic divergence. Calls and songs differ in their particular patterns of geographic variation, probably because of the larger influence of sexual selection on songs than on calls. These patterns are supportive of neither acoustic adaptation nor morphology being major drivers of divergence in vocalizations. Rather, these results support the importance of stochastic evolution of communication systems in the evolution of new species.



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Tuesday, April 22, 2008

A Bird's Way Up

ResearchBlogging.org


Student post submitted by Emily Felts.

In an article published in Bioscience two years ago entitled “What Use Is Half a Wing in the Ecology and Evolution of Birds?”, authors Kenneth Dial and colleagues suggest the answer is climbing. The authors reject the traditional view of wing evolution in birds as either ground-up, or tree-down, and suggest a third, up-a-rock model. They used the chukar partridge as a model because it is a ground bird that prefers to use wing-assisted incline running or WAIR to flying in gaining higher ground, and has precocial development(a trait that is thought to be shared with birds' dinosaur ancestors. They then record various activities of chukar chicks and adults.


The authors criticize the tree-down and ground-up models as both limited and unsupported. The tree-down model, they argue, is not a clear and logical explanation for how wings for gliding could have evolved for flying. They suggest the current examples of gliding by vertebrates, such as squirrels with extra skin who glide form limb to limb and to avoid injury during falls, are sufficient for an arboreal environment and show no inclination to need or that they would gain an advantage by the adaptation of flight. The ground-up hypothesis is even less likely say the authors, the idea that proto-wings were used to accelerate running seems unlikely when no bipedal organism currently uses that strategy.


I think their point on the flaws with the tree-down hypothesis demonstrates how hypotheses for the evolution of characters are weakened when they lack a way to support them through observation, experimental, or correlative methods. An explanation for how and why a feature came to evolve needs more than just an intuitive guess. I think they made an even better argument with the weakness of ground-up because if using wings or proto-wings to increase speed was advantageous, it would seem that some of the extant fast running, bipedal birds like the ostrich would employ it, rather than tucking its wings out of the way. Also, flapping arms\proto-wings\wings to gain speed would be energetically costly and would only be advantageous in that it allowed the organism to run faster than its prey/predator, thus I think the use of arms\proto-wings\wings for acceleration is overkill.dialnaturecover1_001.jpg


Fairly recently, certain ground birds have been discovered to use their wings to run up steep inclines, even at ninety degree angles. This is called wing-assisted incline running (WAIR) and is preferentially used to flying when the terrain makes it possible. Because chukars are ground dwelling, they have powerful leg muscles that are capable of sustained work. Though chukars are fully capable of flight, their wings are dependent on anaerobic energy and they tire easily. WAIR is thought to be an energy efficient means of escape for the ground birds that exhibit it. The authors argue (as a few have before them) that WAIR is a good model for the transient stages of flight and that it shows a gradient of adaptation that gives a possible explanation to how wings capable of full flight arose.


The authors tested the wing stroke and the force generated during WAIR with adult chukars. They found that the wing stroke was similar to a flying stroke, but rotated so the force pulls the bird toward the substrate and slightly upwards, increasing traction and adding some propulsion. They also showed that the majority of the ascension was powered by the legs. Then, they used day old to adult chukars to simulate the use of WAIR with less developed wings to those that can fly. Chukar chicks are incapable of true flight until they are seven or eight days old, though they can run soon after hatching. They reach their full flight capabilities by seventy days. The authors tested WAIR ability as the chukars were growing up. In some of the chicks, they plucked out the wing flight feathers, in others, they trimmed the feathers to half their size, and some they left intact. Though the intact birds did WAIR best and the plucked birds worst, all used WAIR to get to elevated areas. They authors also found that chukars start with symmetrical flight feathers before later developing their asymmetrical flight feathers usually seen in adult birds. Though symmetrical feathers are often thought to have no aerodynamic value and not meant for flight, birds in this stage are capable of creating aerodynamic force to ascend steeper inclines then they could otherwise do.


Because the developing feathers and bodies of young birds can give insight into transitional forms of flight, this experiment did well in using developing birds. Also, by using modified wings, they showed that even a proto-wing with the less derived symmetrical feathers could be useful in WAIR for escaping predators. By showing that the wing stroke during WAIR could be modified for flight by simply rotating it, they support their clam that WAIR could represent a transitional step. Though the wing stroke during WAIR may be a precursor to flight, the authors didn’t mention that the similarity might exist because WAIR may have come after fully flight, rotating the wing stroke from that of propulsion through the air, to up a cliff.


The experiments done by the authors furthered the understanding of WAIR and made a decent argument for it being the transitional step to flight. That WAIR can be used by modified wings, useless for flight, as well as wings capable of flight demonstrates a possible transition from a flightless ground bird, to one that is capable of powered flight. That the authors demonstrated that a symmetrical feather can be aerodynamically useful might also lead to a reinterpretation of the fossil record, where birds with symmetrical feathers were often assumed to be flightless. The article is also a call to base ideas on possible functions of transitional forms on evidence from many disciplines such as life history, and development to achieve a more holistic and complete model rather than one based on some evidence but with guesswork filling in the blanks.


[Editor's note: Ken Dial and colleagues have recently published another paper in Nature (which Emily must've have missed) where they tested their theory further, by focusing specifically on wing-stroke kinematics. You can download the article and read more about this work from Dial's website - Madhu Katti]

Reference:


Dial, K.P., Randall, R.J., Dial, T.R. (2006). What Use Is Half a Wing in the Ecology and Evolution of Birds?. BioScience, 56(5), 437. DOI: 10.1641/0006-3568(2006)056[0437:WUIHAW]2.0.CO;2


Dial, K.P., Jackson, B.E., Segre, P. (2008). A fundamental avian wing-stroke provides a new perspective on the evolution of flight. Nature, 451(7181), 985-989. DOI: 10.1038/nature06517



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